PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476889.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 321aa    MW: 35270.9 Da    PI: 9.4862
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-10556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ ++ ++G+g W+tI +          R+  ++k++w++ 
   XP_016476889.1  5 KQKWTSEEEAALKAGILKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRNM 56
                     79***********************************66***********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.941161IPR017930Myb domain
SuperFamilySSF466891.31E-15274IPR009057Homeodomain-like
SMARTSM007178.7E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-13457IPR009057Homeodomain-like
PfamPF002492.3E-7556IPR001005SANT/Myb domain
CDDcd116604.00E-18657No hitNo description
PROSITE profilePS5150423.25114188IPR005818Linker histone H1/H5, domain H15
SMARTSM005267.2E-12118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.47E-15120196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-14121193IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.3E-7125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGI LKHGPGKWRT ILKDPEFSGV LCLRSNVDLK DKWRNMTVMA  60
NGWSSREQAR LAVKRTKQAP RQDGSPVADT TTAESDEEAA EAQAATTSSG SPQIHGSRKA  120
MIRLDNLIME AISSLKEPGG SNKTTIAAYI EDQYWAPPNF IRLLSGKLKY LTATGKLIKI  180
KRKYRVAPTS TPSDRRRNLS SPFLDSRQRI FSKVDRDYMD MLSTSQIDLE IANKMRNMTP  240
QEAAAAAAQA VAEAEAAIAE AEEAARDAEA HEADAEAAKA FSDATKTLHG RSAPRMVMVE  300
AYQLTSWNDK SLAHQCFTGV Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-104HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476887.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_016476888.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_016476889.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
SwissprotQ8VWK43e-98TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLM1C4E11e-158M1C4E1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000595421e-158(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-89telomere repeat binding factor 1